Proffer documentation
=====================

.. image:: _static/proffer-logo.png
   :height: 128px
   :alt: The logo of proffer, showing a colorful, stylized protein structure

**Proffer** is fast and flexible tool for *pro*\ tein in\ *fer*\ ence in
bottom-up proteomics experiments.


Getting Started
---------------

For help installing and running Proffer, see the :doc:`quickstart`.

Contents
========

.. toctree::
    :maxdepth: 4

    quickstart
    benchmark-viz