Plasma Proteins Biomarkers

The collection of plasma biomarker proteins for assessing sample composition.

Usage

plasma_markers_geyer

Format

An object of class spec_tbl_df (inherits from tbl_df, tbl, data.frame) with 60 rows and 9 columns.

Source

https://www.embopress.org/doi/10.15252/emmm.201910427

References

Geyer, P. et al. (2019). Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies. EMBO Molecular Medicine, 11(11), e10427.

Examples

data(plasma_markers_geyer)
head(plasma_markers_geyer)
#> # A tibble: 6 × 9
#>   protein_names                      gene_names protein_ids majority_protein_ids
#>   <chr>                              <chr>      <chr>       <chr>               
#> 1 Hemoglobin subunit alpha           HBA1       P69905      P69905              
#> 2 Hemoglobin subunit beta;LVV-hemor… HBB        P68871      P68871              
#> 3 Carbonic anhydrase 1               CA1        P00915;E5R… P00915;E5RHP7;E5RH8…
#> 4 Hemoglobin subunit delta           HBD        P02042;E9P… P02042;E9PFT6       
#> 5 Peroxiredoxin-2                    PRDX2      P32119;A6N… P32119              
#> 6 Carbonic anhydrase 2               CA2        P00918;E5R… P00918              
#> # ℹ 5 more variables: med_int_log10_contamination_source <dbl>,
#> #   cv_contamination_source <dbl>, med_int_log10_plasma <dbl>, unknown <dbl>,
#> #   contamination_source <chr>